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7 PhD Mistakes You Don't Know You're Making [Avoid These 7 Disasters] thumbnail

7 PhD Mistakes You Don't Know You're Making [Avoid These 7 Disasters]

Andy Stapleton·
5 min read

Based on Andy Stapleton's video on YouTube. If you like this content, support the original creators by watching, liking and subscribing to their content.

TL;DR

Regain control of research pace by mapping supervisor-caused blockers and creating workarounds at least once per year.

Briefing

The biggest PhD mistake highlighted is letting a supervisor control the pace and direction of research—especially when that control turns into recurring delays, shifting goals, or stalled feedback. The practical fix is to treat blockers as something to work around, not something to wait out. At least once a year, students should inventory the specific problems caused by their supervisor’s behavior (for example, slow returns on writing or sudden project changes) and brainstorm routes around them. That can mean routing drafts to other people for feedback, keeping certain details private for a short period to preserve momentum, or pursuing a line of work for a few months before aligning with the supervisor again. The message is not to fight every decision, but to regain agency so progress doesn’t depend on one gatekeeper.

The guidance then widens from supervision to the broader mechanics of staying effective during a PhD. A key warning is that AI policies are moving fast, and students should check journal requirements regularly—because even major science-family journals have reversed course on ChatGPT-authored papers. With the field in a “gray zone,” the safest approach is to verify current rules for each target journal and revisit them as policies change.

Another recurring theme is that students often underestimate the value of the “Materials and Methods” section in peer-reviewed papers. Instead of skimming, the advice is to use it as a skills roadmap: identify techniques that appear repeatedly and that the student cannot yet perform, then set a yearly plan to learn at least one or two of those methods. The example given includes learning tools such as scanning electron microscopy, transmission electron microscopy, and atomic force microscopy—skills that build credibility in academia and remain transferable outside it.

Progress also depends on strategy, not just experiments. Students are encouraged to arrange at least one annual meeting with supervisors focused on big-picture alignment: confirming the project direction and ensuring the research question still matches where the work has evolved. Since research questions naturally shift as new findings emerge, the annual check-in helps prevent silent drift.

To keep that drift productive, students should actively track emerging trends in their field multiple times per year. The transcript suggests using AI-assisted literature discovery tools (with examples like searching for “recent Trends in opv devices,” sorting by recency, and scanning review papers for new sub-areas such as indoor applications) to spot where the field is moving and to identify potential directions.

Finally, the advice pushes students to plan beyond the PhD rather than defaulting to a postdoc out of pressure. Networking with people outside academia, talking to graduates from the same research group, and seeking interdisciplinary inspiration—through seminars, adjacent departments, or sitting in on other groups’ meetings—are framed as ways to make the PhD more engaging and to reduce the sense of being trapped in one career path.

Cornell Notes

The core lesson is to protect PhD momentum by not letting a supervisor’s delays or shifting priorities fully determine research pace. Students should, at least yearly, map supervisor-related blockers and create workarounds—such as seeking feedback from other people or temporarily pursuing a line of work without oversharing details. The transcript also stresses staying current: journal AI policies can change quickly, so students should check rules regularly before submitting. To build long-term capability, students should mine “Materials and Methods” sections for techniques to learn, then set a yearly skills plan. Finally, students should run an annual strategy meeting, track emerging trends, and plan career options beyond academia instead of assuming a postdoc is the default.

Why is relying on a supervisor’s pace described as a major risk, and what concrete workaround is recommended?

The risk is that supervisors can introduce repeated blockers—like delaying feedback on writing for long periods or changing the project direction “at the drop of a hat.” The workaround is to regain agency at least once a year: write down the issues with the supervisor and brainstorm alternatives. If feedback is slow, route drafts to other people for review. If the topic shifts unpredictably, students may not need to disclose every detail immediately and can pursue a specific thread for a couple of months, then align later.

What should students do about AI tools when preparing papers for journals?

Because AI policies are changing rapidly, students should check the AI policy of each journal they plan to submit to—and do it regularly. The transcript cites a reversal by a prominent science-family journal that moved from banning ChatGPT-authored papers to allowing them, illustrating how quickly rules can flip.

How can “Materials and Methods” sections be used as a learning plan rather than just a paper requirement?

Instead of skimming, students should treat the methods section as a list of skills to build. At least once a year, review methods in papers to identify techniques that appear often and that the student cannot yet perform. Then set a plan to learn at least one or two of those skills each year. The example includes learning scanning electron microscopy, transmission electron microscopy, and atomic force microscopy.

What should an annual supervisor meeting focus on to keep research aligned?

The meeting should cover big issues and strategy: confirm project direction and verify that everyone agrees on the research question. Since research questions evolve as new findings emerge, the annual check helps prevent drift. The transcript suggests doing this at least once a year, and possibly more depending on the field’s speed.

How does tracking emerging trends fit into career and research planning?

Emerging trends help students choose directions that match where the field is moving. The transcript recommends checking trends multiple times per year using AI-assisted literature discovery and review papers sorted by recency. It also links trend awareness to future planning—especially for grants, post-PhD applications, and networking—while warning that many students fail to plan beyond the PhD.

Review Questions

  1. What specific behaviors from a supervisor create the “blockers” problem, and how does the recommended annual workaround address each one?
  2. How would you design a yearly plan to learn new experimental skills using information from “Materials and Methods” sections?
  3. What steps would you take to keep journal AI policies from derailing a submission timeline?

Key Points

  1. 1

    Regain control of research pace by mapping supervisor-caused blockers and creating workarounds at least once per year.

  2. 2

    If feedback is slow, seek input from other qualified people rather than waiting indefinitely for one supervisor.

  3. 3

    Treat journal AI policies as dynamic: check the rules for each target journal regularly before submitting.

  4. 4

    Use “Materials and Methods” sections as a skills roadmap; learn at least one or two recurring techniques each year.

  5. 5

    Schedule an annual strategy meeting to confirm project direction and ensure the research question still matches the work.

  6. 6

    Track emerging field trends multiple times per year using recent review papers to guide research direction and future grant or career decisions.

  7. 7

    Plan career options beyond academia early; don’t default to a postdoc solely due to training pressure.

Highlights

The most urgent fix is to stop letting one supervisor dictate pace: students should work around delays and shifting priorities by building alternative feedback and momentum routes.
Journal AI rules can flip quickly; students are urged to check AI policies regularly because major journals have reversed positions on ChatGPT-authored papers.
“Materials and Methods” is framed as a training checklist—students should identify techniques they can’t yet do and commit to learning them yearly.
Annual alignment matters: a yearly meeting should re-confirm project direction and the research question as it evolves.
Interdisciplinary exposure—through seminars, adjacent group meetings, and sitting in—can make a PhD more engaging and broaden career options.

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