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Organise, Structure and Draft Your Research Using SciSpace | Webinar with Omkar Jadhav thumbnail

Organise, Structure and Draft Your Research Using SciSpace | Webinar with Omkar Jadhav

SciSpace·
5 min read

Based on SciSpace's video on YouTube. If you like this content, support the original creators by watching, liking and subscribing to their content.

TL;DR

SciSpace Library organizes research via Zotero import, PDF uploads, and bookmarking SciSpace-hosted papers into chosen collections.

Briefing

A research workflow that usually takes weeks—collecting papers, extracting what matters, and assembling a citation-backed draft—gets a new end-to-end path in SciSpace’s toolkit. The core promise is straightforward: turn a stack of domain papers into a publish-ready draft with citations, while keeping every claim anchored to the underlying text rather than floating on generic AI output.

The process starts in SciSpace Library, built to organize research from multiple entry points. Papers can be imported directly from Zotero in a two-click flow, after which SciSpace extracts structured information from each PDF and generates a short “ELDR” summary (three to five points) for quick recall later—even if the library grows to hundreds of files. For researchers who already have PDFs on their computer, SciSpace supports direct uploads and automatically pulls metadata such as title, authors, publication year, and journal. For papers discovered inside SciSpace’s own corpus (described as 220 million-plus hosted papers), a “bookmark” button saves relevant items into a chosen collection. A “request PDF” feature also addresses access gaps: when a paper isn’t open access, users can message the author requesting the PDF, and SciSpace sends the email on the user’s behalf.

Once the library is assembled, SciSpace Copilot helps synthesize it. “Library Insight” answers questions using only the imported documents, selecting the most relevant subset of papers and returning responses with citations. The system emphasizes traceability: each statement is tied to supporting text in the PDFs, with a “locate in PDF” option to jump directly to the exact paragraph. For deeper, paper-by-paper extraction, an “extract data” table can generate conclusions or other targeted fields for each selected PDF. Notes are handled inside the workflow too: a “save to notebook” button stores insights along with citations and a link back to the source answer, so context doesn’t get lost during drafting.

SciSpace Copilot also includes “Chat with PDF,” designed for close reading. Users can open a PDF and ask for explanations of selected text, or request breakdowns of math, tables, and figures via an “explain math and table” function. The interface supports one-click question prompts, concise summaries for long papers, and even a podcast-style narration of the document.

The final step is drafting with AI Writer. Users can build an outline using an “outline builder” to avoid the cold-start problem, then use “continue writing with citations” to generate sections that prefer material from the user’s library but can also draw from SciSpace’s broader paper database when needed. A citation workflow is built into writing: if a paragraph needs sources, the system can suggest papers that support it, and references can be reformatted (e.g., switching citation styles) in one click. Drafts can be exported to a document file for sharing or continued editing elsewhere.

For a more automated “one-shot” approach, SciSpace introduces an agent that takes a single statement and produces a systematic literature review plan aligned with PRISMA-style steps: it creates inclusion/exclusion criteria, searches multiple databases (including PubMed and Google Scholar), downloads full texts, deduplicates papers, extracts data, and outputs a full report—demonstrated as taking about 30 minutes for one example statement. The takeaway is a shift from manual literature juggling to a guided pipeline that prioritizes citation-backed accuracy at every stage.

Cornell Notes

SciSpace’s workflow is designed to convert research papers into a citation-backed draft with minimal manual effort. SciSpace Library organizes papers via Zotero import, PDF uploads, and bookmarking items found on SciSpace; it also extracts metadata and generates short summaries (ELDR) for fast navigation. Copilot then synthesizes the library through Library Insight (question answering with citations and “locate in PDF”), extract data tables (paper-by-paper fields like conclusions), and Chat with PDF (explanations, math/table/figure breakdowns, summaries, and podcast-style narration). AI Writer turns notes and insights into structured drafts using outline builder and “continue writing with citations,” with citation suggestions and one-click reference formatting. A separate SciSpace Agent can run the whole PRISMA-style literature review pipeline from a single statement, including multi-database searching and deduplication.

How does SciSpace Library reduce the pain of managing a large paper stack?

It offers multiple ingestion paths—Zotero import (described as a two-click process), uploading PDFs from a computer, and bookmarking papers discovered on SciSpace. After import/upload, SciSpace extracts metadata (title, authors, year, journal) and generates an ELDR summary of three to five points per paper. That summary acts like a quick index, so a user can return days later and still locate the right paper without rereading everything.

What makes SciSpace’s AI outputs more trustworthy than typical “free-form” text generation?

SciSpace ties generated statements to supporting text in the PDFs. In Library Insight, answers come with citations and a “locate in PDF” control that navigates to the exact paragraph supporting a claim. The system also frames answers as citation-backed rather than standalone generation, and it uses the underlying documents it has access to.

When should a researcher use Library Insight versus extract data tables?

Library Insight is for answering a question using the library and selecting the most relevant papers automatically (the demo selected the top five out of six). Extract data tables are for structured, paper-by-paper outputs—e.g., generating the conclusion for each selected PDF or extracting a specific field from each paper individually.

How does Chat with PDF support deep understanding of a single paper?

It supports selection-based explanation of text and also explanation of non-text elements. Users can select a statement and ask for an explanation that uses evidence from across the whole paper (not just the selected sentence). For visuals, it includes “explain math and table,” letting users request breakdowns of equations, graphs, and figures. It also offers one-click question prompts, concise summaries, and a podcast-style narration mode.

How does AI Writer help someone draft without getting stuck at the outline stage?

AI Writer includes an outline builder that generates topic-specific section headings to solve the cold-start problem. After the outline exists, “continue writing with citations” fills sections with citation-backed text. If the system needs sources, it can discover relevant papers from SciSpace’s corpus; users can also add citations manually via a citation suggestion popup.

What does the SciSpace Agent do differently from the step-by-step toolkit?

The agent runs the workflow in one go from a single statement. It creates a plan for a systematic literature review following PRISMA-style steps, including inclusion/exclusion criteria, multi-database searching (explicitly including PubMed and Google Scholar), downloading full texts, deduplicating papers, extracting data, and producing a full report. A demo cited about 30 minutes for one example statement.

Review Questions

  1. If a user uploads 500 PDFs to SciSpace Library, what mechanisms are described for quickly finding the right paper later?
  2. How does “locate in PDF” change the way a researcher should verify AI-generated claims?
  3. What are the practical differences between Library Insight, extract data tables, and Chat with PDF?

Key Points

  1. 1

    SciSpace Library organizes research via Zotero import, PDF uploads, and bookmarking SciSpace-hosted papers into chosen collections.

  2. 2

    Uploaded/imported PDFs automatically get metadata extraction (title, authors, year, journal) and short ELDR summaries (three to five points) for fast retrieval.

  3. 3

    Library Insight answers questions using the user’s library and returns citation-backed statements with a “locate in PDF” verification path.

  4. 4

    Extract data tables enable structured, paper-by-paper outputs such as conclusions for each selected PDF.

  5. 5

    Chat with PDF supports explanation of selected text plus math/table/figure interpretation, along with summaries and podcast-style narration.

  6. 6

    AI Writer converts notes and insights into drafts using an outline builder and “continue writing with citations,” with citation suggestions and one-click reference style changes.

  7. 7

    The SciSpace Agent can run a PRISMA-style systematic review pipeline from a single statement, including multi-database searching, full-text downloading, and deduplication.

Highlights

SciSpace Library generates an ELDR summary (3–5 points) per PDF, turning a large pile of papers into something searchable by meaning rather than file names.
AI Writer’s drafting workflow is built around citation traceability—claims can be tied back to exact PDF passages, not just appended references.
The SciSpace Agent demonstrates an end-to-end PRISMA-style review from a single statement, including searching PubMed and Google Scholar, downloading full texts, and deduplicating.

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